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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34161849_34162089_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34161849 - 34162089
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTCTGCTGAAAA
Flanking Amino Acid:
SWQLVLATLQHLVWILGLKP
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
71.6
0.54
1
72
33.1
Major PPT
85.1
0.79
0.8
82.2
34.1
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
53.5
0.11
2
69.51
42.5

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675
ENSAPLT00000022454
34128742 - 34218383
89642