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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34162171_34162256_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34162171 - 34162256
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
GTCTCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTAAGATAATT
Flanking Amino Acid:
PGRAVEGPSTVLTTAVMTDL
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
66.8
44.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
72.9
0.52
1
71
38.8
Minor 5ss
45.2
-0.5
2.9
63.4
41.8
Minor BPS
44
-0.3
2.4
67.74
42.7

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015905
34128742 - 34197416
68675
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354