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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34162500_34163836_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34162500 - 34163836
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
CCCTTTTACTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTCCCTTTTACT
Flanking Amino Acid:
AMDMAYGNNKEPSLFAVAKL
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
65.2
0.34
1
70.6
32.8
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
65.8
0.58
1.6
81.49
40.1

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675