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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34163939_34167208_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34163939 - 34167208
Intron Length:
3270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GTGCCTTTAAAC
Flanking Amino Acid:
WRPLTGHLLEVCQHPNSRMR
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
80.6
0.69
0.9
76.9
42.1
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
61.9
0.35
1.4
66.01
39.2

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675