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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34167320_34168119_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34167320 - 34168119
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
TACTGTTTACTT
Flanking Amino Acid:
SHDPPLSQNQRLQLLLLNPL
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
81
0.7
0.8
78.7
34.8
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
49.2
0.02
2
68.01
43.8

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675