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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34174216_34178984_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34174216 - 34178984
Intron Length:
4769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGATGCTCAAGC
Flanking Amino Acid:
VLTALDVLQKAICVGSENMQ
Intron Amino Acid Position:
1347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77.4
37.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81
0.7
0.8
76.5
32.3
Minor 5ss
37.2
-1.5
3
49.1
46.7
Minor BPS
46.9
-0.2
2.2
60.35
44.4

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675