Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34179129_34179671_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34179129 - 34179671

Intron Length:

543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTTAT

5'SS Class:

strong_major

3'SS Sequence:

GGAATCACACTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TTCTATTCATCC

Flanking Amino Acid:

KHIANAKYNQIQLFAPAEWV

Intron Amino Acid Position:

1395

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

85.9

25.1

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

49.2

-0

38.5

39.6

Minor 5ss

41.9

-0.9

2.9

58.4

46.2

Minor BPS

47.9

-0.1

1.9

63.26

42.4

Associated Gene:

Gene:

MON2

Ensembl Gene ID:

ENSAPLG00000015190

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022454

34128742 - 34218383

89642

ENSAPLT00000015905

34128742 - 34197416

68675