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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34179129_34179953_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34179129 - 34179953
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AGTTCAGTAATT
Flanking Amino Acid:
KHIANAKYNQAEWVALNYVP
Intron Amino Acid Position:
1395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.5
0.69
0.7
74.3
35.9
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
52.5
0.16
2.2
76.48
40

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022005
34128742 - 34205095
76354