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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34180083_34181960_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34180083 - 34181960
Intron Length:
1878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTGAACT
Flanking Amino Acid:
NEKVLQNIIKTLRIPLSLKY
Intron Amino Acid Position:
1444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.81
0.8
80.8
36.4
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
68.4
0.66
1.4
85.2
34.8

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015905
34128742 - 34197416
68675
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354