About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34190959_34192252_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34190959 - 34192252
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATT
Flanking Amino Acid:
FQKNESIDVEVVQLISTEIL
Intron Amino Acid Position:
1528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.9
0.61
0.9
75.1
39.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
74.3
0.84
1.3
87.25
31.8

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675
ENSAPLT00000022454
34128742 - 34218383
89642