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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34196731_34197410_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34196731 - 34197410
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAAC
5'SS Class:
major
3'SS Sequence:
TCTAAATTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTACTTACAG
Flanking Amino Acid:
KDFMHPPASKI*
Intron Amino Acid Position:
1714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.5
39
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.3
0.37
1.1
58.4
46.1
Minor 5ss
30.8
-2.2
3.4
42.1
44.9
Minor BPS
57
0.08
2
69.83
43

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015905
34128742 - 34197416
68675