About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34196731_34204891_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34196731 - 34204891
Intron Length:
8161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAAC
5'SS Class:
major
3'SS Sequence:
TTTTCACCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCTTTTCACCT
Flanking Amino Acid:
KDFMHPPASKHVPNRKDALS
Intron Amino Acid Position:
1708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.5
39
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.5
0.78
0.7
78.7
28.9
Minor 5ss
30.8
-2.2
3.4
42.1
44.9
Minor BPS
48.7
-0
1.8
66.64
44.9

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022005
34128742 - 34205095
76354