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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34196731_34218326_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34196731 - 34218326
Intron Length:
21596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAAC
5'SS Class:
major
3'SS Sequence:
CCCATTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
ATCATATTGACT
Flanking Amino Acid:
KDFMHPPASKDAWTKIVNAG
Intron Amino Acid Position:
1714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.5
39
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
71.1
0.48
1
67.7
37.6
Minor 5ss
30.8
-2.2
3.4
42.1
44.9
Minor BPS
53.3
0.18
1.7
70.9
39.9

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642