Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34247861_34253666_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34247861 - 34253666

Intron Length:

5806

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAACAG

5'SS Class:

major

3'SS Sequence:

TTGTGTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

CTCTCATGATGT

Flanking Amino Acid:

IKPFLSSSPEVRVYDLLQYE

Intron Amino Acid Position:

419

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

64.9

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

75.6

0.58

73.5

41.9

Minor 5ss

30.7

-2.2

3.1

38.3

46.6

Minor BPS

43.1

-0.4

2.2

61.57

47.8

Associated Gene:

Gene:

PPM1H

Ensembl Gene ID:

ENSAPLG00000014950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029160

34240276 - 34374400

134125

ENSAPLT00000015609

34244725 - 34374400

129676