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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3432821_3438189_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3432821 - 3438189
Intron Length:
5369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAAAGTT
5'SS Class:
major
3'SS Sequence:
CTCCTTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AGTTAATTAAAA
Flanking Amino Acid:
AIKLCHQIERQVDIQLQSAR
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.1
66
38.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.7
0.67
0.7
72.1
32.5
Minor 5ss
37
-1.5
3.7
52.2
45.6
Minor BPS
52.4
0.07
1.9
66.92
38.2

Associated Gene:

Gene:
SFMBT2
Ensembl Gene ID:
ENSAPLG00000012668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036909
3432656 - 3531273
98618