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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_343713_343794_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
343713 - 343794
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
CTGTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTTTCTCACCG
Flanking Amino Acid:
PYDFRLTEKEKTSICYLSFP
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.4
0.71
0.9
76.3
37.7
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
53.2
-0
1.9
63.97
43.8

Associated Gene:

Gene:
DENND6B
Ensembl Gene ID:
ENSAPLG00000009711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010142
328733 - 348761
20029