About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34379163_34382390_F

Intron Information:

Intron Rank:
132841
Intron Class:
major_hybrid
Intron Phase:
Intron Coordinates:
34379163 - 34382390
Intron Length:
3228

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
CTG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAACAAGG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
66.1
45
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
40.1
-0.5
3.2
64.7
39.7
Minor 5ss
31.8
-2.1
3.1
36.6
41.8
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019934
34378875 - 34383432
4558