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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34382608_34383020_F

Intron Information:

Intron Rank:
132842
Intron Class:
major
Intron Phase:
Intron Coordinates:
34382608 - 34383020
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTACCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.6
0.6
0.9
72.4
37.5
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
74.7
0.86
1.2
84.92
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019934
34378875 - 34383432
4558