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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34522207_34523053_R

Intron Information:

Intron Rank:
151635
Intron Class:
major
Intron Phase:
Intron Coordinates:
34522207 - 34523053
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGCT
5'SS Class:
major
3'SS Sequence:
ATCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
ATATCCTGATAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.9
39.4
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
83
0.74
0.9
80.7
36.3
Minor 5ss
30.3
-2.3
3.3
42
44.7
Minor BPS
51.5
0.04
1.8
65.51
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026160
34495891 - 34523227
27337