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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34522207_34534658_R

Intron Information:

Intron Rank:
151638
Intron Class:
major
Intron Phase:
Intron Coordinates:
34522207 - 34534658
Intron Length:
12452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ATCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
ATATCCTGATAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
83
0.74
0.9
80.7
36.3
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
51.5
0.04
1.8
65.51
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042957
34522009 - 34534704
12696
ENSAPLT00000039590
34495192 - 34534704
39513