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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34586481_34587447_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34586481 - 34587447
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ATCATTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATCATTT
Flanking Amino Acid:
RVQIWGKAAIGLYLWQHIFE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
71.1
0.47
0.9
66.5
39
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
49.4
0.03
2
73.31
43.8

Associated Gene:

Gene:
RXYLT1
Ensembl Gene ID:
ENSAPLG00000007809
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008108
34585577 - 34595637
10061