Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34587551_34591392_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34587551 - 34591392

Intron Length:

3842

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTAGCT

5'SS Class:

major

3'SS Sequence:

TCGGTTTTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TCGGTTTTCACA

Flanking Amino Acid:

GSQKAGKTYFSFITGPSVVP

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

65.5

38.6

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

0.61

0.9

71.5

38.4

Minor 5ss

32.1

-2

3.6

48.9

46.8

Minor BPS

48.2

-0.1

1.8

57.37

43.2

Associated Gene:

Gene:

RXYLT1

Ensembl Gene ID:

ENSAPLG00000007809

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008108

34585577 - 34595637

10061