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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34591708_34593698_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34591708 - 34593698
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
GTTGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATGTCATTATCT
Flanking Amino Acid:
DIFQWPLGVATYRNFPVVEP
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
35.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.8
0.81
0.8
79.9
37.7
Minor 5ss
36.7
-1.5
3.3
49.9
39.7
Minor BPS
61.1
0.43
1.9
79.77
41.9

Associated Gene:

Gene:
RXYLT1
Ensembl Gene ID:
ENSAPLG00000007809
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008108
34585577 - 34595637
10061