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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3459410_3459969_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3459410 - 3459969
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TGCTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGCTCTTTAACA
Flanking Amino Acid:
RRIAVVQPEKQLPSTVPVEK
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
76.9
0.6
0.9
72.8
36.2
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
79.3
0.92
1.1
79.83
36.4

Associated Gene:

Gene:
SFMBT2
Ensembl Gene ID:
ENSAPLG00000012668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036909
3432656 - 3531273
98618
ENSAPLT00000028565
3400206 - 3531273
131068
ENSAPLT00000013226
3418936 - 3531273
112338