About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3461425_3467596_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3461425 - 3467596
Intron Length:
6172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATAA
Flanking Amino Acid:
KGRLMWLHLEGLQMPSPEYI
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.8
0.71
0.9
76.5
37.7
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
55.8
0.18
2
72.75
38.5

Associated Gene:

Gene:
SFMBT2
Ensembl Gene ID:
ENSAPLG00000012668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028565
3400206 - 3531273
131068
ENSAPLT00000013226
3418936 - 3531273
112338
ENSAPLT00000036909
3432656 - 3531273
98618