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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34614841_34616895_R

Intron Information:

Intron Rank:
150542
Intron Class:
major
Intron Phase:
Intron Coordinates:
34614841 - 34616895
Intron Length:
2055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
TTTTCTTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
81.5
0.71
0.8
78.5
28.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
64.5
0.54
2
87.98
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028475
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018884
34614795 - 34618451
3657