Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34616945_34617699_R

Intron Information:

Intron Rank:

150543

Intron Class:

major

Intron Phase:

Intron Coordinates:

34616945 - 34617699

Intron Length:

755

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTGTCTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCCTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.9

78.6

37.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

79.3

0.66

0.8

73.7

36.4

Minor 5ss

32.4

-2

3.4

46.7

48.6

Minor BPS

57.4

0.31

1.6

70.13

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032285

34616712 - 34617821

1110

ENSAPLT00000018884

34614795 - 34618451

3657