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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34617788_34618429_R

Intron Information:

Intron Rank:
150544
Intron Class:
major
Intron Phase:
Intron Coordinates:
34617788 - 34618429
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTCTC
5'SS Class:
major
3'SS Sequence:
TTTTATCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCGTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
67.1
44.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.7
81.8
29.8
Minor 5ss
42.9
-0.8
3.2
61.5
43.4
Minor BPS
66.9
0.61
2.1
87.9
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028475
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018884
34614795 - 34618451
3657