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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34632652_34708899_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34632652 - 34708899
Intron Length:
76248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGACT
Flanking Amino Acid:
IIAEYESQVKEIRAQLVEQQ
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.6
88.2
21.6
Minor 5ss
36.7
-1.5
3.3
47.6
48
Minor BPS
64.6
0.54
2
89.86
33.7

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025345
34632585 - 34784998
152414