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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34656611_34708899_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34656611 - 34708899
Intron Length:
52289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCTC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGACT
Flanking Amino Acid:
SLTSQMERNQEIRAQLVEQQ
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
68.8
42.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.6
88.2
21.6
Minor 5ss
40.3
-1.1
2.8
53.3
43.8
Minor BPS
64.6
0.54
2
89.86
33.7

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008430
34656386 - 34784695
128310