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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3469448_3474490_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3469448 - 3474490
Intron Length:
5043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TGTTGTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TGGCTGATAGCA
Flanking Amino Acid:
KNGVNLTPPKGYSGQDFDWA
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
75.6
40
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
80.4
0.68
0.9
74
36.8
Minor 5ss
43.7
-0.7
2.5
53.2
43.6
Minor BPS
39
-0.8
2.2
50.14
40.8

Associated Gene:

Gene:
SFMBT2
Ensembl Gene ID:
ENSAPLG00000012668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036909
3432656 - 3531273
98618
ENSAPLT00000028565
3400206 - 3531273
131068
ENSAPLT00000013226
3418936 - 3531273
112338