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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34711370_34721950_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34711370 - 34721950
Intron Length:
10581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
SEDSTRMFKKSKEIAFQLHE
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.5
0.84
0.8
81.9
33.4
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008430
34656386 - 34784695
128310
ENSAPLT00000025345
34632585 - 34784998
152414
ENSAPLT00000023232
34708953 - 34784998
76046