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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34722014_34732350_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34722014 - 34732350
Intron Length:
10337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTCCTAATT
Flanking Amino Acid:
LMKVLNELYTVMKTYHMYHA
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.1
0.79
0.8
80.2
31.8
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
67
0.61
1.6
85.92
33.7

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025345
34632585 - 34784998
152414
ENSAPLT00000023232
34708953 - 34784998
76046
ENSAPLT00000008430
34656386 - 34784695
128310