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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34732534_34732912_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34732534 - 34732912
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATAGT
5'SS Class:
major
3'SS Sequence:
ATCTCTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AGTAATTCAAAT
Flanking Amino Acid:
VKKIEKMKEKRQAKYSENKL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
77.9
36.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
76.3
0.59
0.8
69.4
36.2
Minor 5ss
38.5
-1.3
2.9
51.1
39.7
Minor BPS
46.2
-0.2
1.8
63.11
40.2

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025345
34632585 - 34784998
152414
ENSAPLT00000023232
34708953 - 34784998
76046
ENSAPLT00000008430
34656386 - 34784695
128310