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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34743518_34746252_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34743518 - 34746252
Intron Length:
2735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGCTTTTTAATA
Flanking Amino Acid:
LATLKIENEEVKKTTEATLQ
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.65
1
72.4
41.5
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
69.5
0.61
1.2
70.9
36

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025345
34632585 - 34784998
152414
ENSAPLT00000023232
34708953 - 34784998
76046
ENSAPLT00000008430
34656386 - 34784695
128310