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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34753502_34757432_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34753502 - 34757432
Intron Length:
3931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGCA
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGCAGTACAC
Flanking Amino Acid:
FNGDLESFIKDSGQVIPLIV
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.7
39.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.7
0.78
0.8
76.5
37.6
Minor 5ss
28.5
-2.5
3.6
39.4
46
Minor BPS
38.7
-0.8
2.4
52.08
45.1

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023232
34708953 - 34784998
76046