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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34754046_34757432_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34754046 - 34757432
Intron Length:
3387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTTC
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGCAGTACAC
Flanking Amino Acid:
GRRNSHTRHQDSGQVIPLIV
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
68.9
36.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.7
0.78
0.8
76.5
37.6
Minor 5ss
46.7
-0.3
3.2
66.9
44.7
Minor BPS
38.7
-0.8
2.4
52.08
45.1

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025345
34632585 - 34784998
152414
ENSAPLT00000008430
34656386 - 34784695
128310