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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34772632_34773326_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34772632 - 34773326
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAC
U12 Branch Point Sequence:
TTCTGCTTGACC
Flanking Amino Acid:
YEKCMAGDDYCDSPYSEHGT
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
56.2
0.15
1.3
51
44.3
Major PPT
83.2
0.75
0.8
74.4
36.5
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
67.8
0.54
1.8
77.61
39

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023232
34708953 - 34784998
76046
ENSAPLT00000008430
34656386 - 34784695
128310
ENSAPLT00000025345
34632585 - 34784998
152414