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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34773407_34781119_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34773407 - 34781119
Intron Length:
7713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
CCTCCCTACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GATCTGATAACC
Flanking Amino Acid:
ASTEPHTSEDECEPIEAIAK
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
34.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
69.5
0.44
0.9
61.2
34
Minor 5ss
39.2
-1.2
3
46.9
43.8
Minor BPS
45.3
-0.3
2.2
58.71
39.5

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025345
34632585 - 34784998
152414
ENSAPLT00000023232
34708953 - 34784998
76046
ENSAPLT00000008430
34656386 - 34784695
128310