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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34782507_34784317_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34782507 - 34784317
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
TGCTCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GTAGCAGTGACT
Flanking Amino Acid:
KPLDPESIAQDIEETMNTAL
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
70
0.45
0.9
61.3
40.1
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
44.9
-0.3
2.3
65.85
44.5

Associated Gene:

Gene:
SRGAP1
Ensembl Gene ID:
ENSAPLG00000008005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008430
34656386 - 34784695
128310
ENSAPLT00000025345
34632585 - 34784998
152414
ENSAPLT00000023232
34708953 - 34784998
76046