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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34791928_34793566_R

Intron Information:

Intron Rank:
142846
Intron Class:
major
Intron Phase:
Intron Coordinates:
34791928 - 34793566
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
CATTTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TATGCCCTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
67.1
44.6
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
71.7
0.49
0.9
65.7
34.8
Minor 5ss
37.6
-1.4
3.2
49.7
46.6
Minor BPS
47.7
-0
2.1
71.28
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033551
34789845 - 34793696
3852