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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34793697_34794510_R

Intron Information:

Intron Rank:
142848
Intron Class:
major
Intron Phase:
Intron Coordinates:
34793697 - 34794510
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGATCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CCCTCTGTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.1
31.6
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
73.1
0.52
0.9
69.7
40.3
Minor 5ss
27
-2.6
3
31.7
42.6
Minor BPS
46.1
-0.3
2
51.92
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035888
34789845 - 34794860
5016