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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34823668_34830066_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34823668 - 34830066
Intron Length:
6399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATGTCTTGAATA
Flanking Amino Acid:
PQHGLPRAEARFHHPILSPL
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.7
0.69
0.9
73.5
41.9
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
65
0.47
1.4
70.38
36.1

Associated Gene:

Gene:
C12orf66
Ensembl Gene ID:
ENSAPLG00000007925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031047
34822320 - 34833532
11213