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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34827458_34830066_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34827458 - 34830066
Intron Length:
2609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
TTTATCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCTGAACA
Flanking Amino Acid:
HSMAFLGQKLGGQSFFSRKD
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.3
0.53
1
69.9
40.2
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
71.1
0.66
1.4
81
33.9

Associated Gene:

Gene:
C12orf66
Ensembl Gene ID:
ENSAPLG00000007925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008221
34822320 - 34830364
8045