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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34830850_34831222_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34830850 - 34831222
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AACTTCTCAACT
Flanking Amino Acid:
MIPRSGSLCR
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.7
28.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
90.3
0.91
0.7
85.5
28.4
Minor 5ss
29
-2.4
3.2
35.5
41.5
Minor BPS
64.4
0.53
1.5
75.6
40.9

Associated Gene:

Gene:
C12orf66
Ensembl Gene ID:
ENSAPLG00000007925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031047
34822320 - 34833532
11213