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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34832763_34833352_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34832763 - 34833352
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCGCT
5'SS Class:
major
3'SS Sequence:
TGTCTAATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACT
Flanking Amino Acid:
SSGEIVYCGQVYEKSPLRVK
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66
39.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.3
0.5
0.9
63.1
42
Minor 5ss
32.5
-2
3.5
47.7
48
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
C12orf66
Ensembl Gene ID:
ENSAPLG00000007925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031047
34822320 - 34833532
11213
Gene:
Ensembl Gene ID:
ENSAPLG00000008007
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008321
34832619 - 34833825
1207