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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34837128_34838490_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34837128 - 34838490
Intron Length:
1363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGAATATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTACTTGAATA
Flanking Amino Acid:
MALAYFEQLKI
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.5
0.53
1
66.4
43.9
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
60.5
0.33
1.5
68.65
38.1

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041582
34837060 - 34857775
20716