Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34838574_34839548_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34838574 - 34839548

Intron Length:

975

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGTGG

5'SS Class:

major

3'SS Sequence:

TCTTCTTTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

TCTAACAGAATT

Flanking Amino Acid:

CAEALAQSIYSDDHIKFFCF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

61.3

45.8

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

0.83

0.6

80.7

31.3

Minor 5ss

41.7

-0.9

3.2

55.9

48.3

Minor BPS

46.9

-0.1

1.9

67.92

42.5

Associated Gene:

Gene:

XPOT

Ensembl Gene ID:

ENSAPLG00000008073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025569

34836522 - 34857356

20835

ENSAPLT00000024288

34836599 - 34860642

24044

ENSAPLT00000020507

34836522 - 34857775

21254

ENSAPLT00000047804

34836599 - 34860642

24044

ENSAPLT00000008445

34836522 - 34860846

24325

ENSAPLT00000041582

34837060 - 34857775

20716