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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34838574_34841197_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34838574 - 34841197
Intron Length:
2624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTGG
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATAGTTTGATCT
Flanking Amino Acid:
CAEALAQSIYRYSELTEVQQ
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
61.3
45.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.5
0.73
0.9
80.2
37.3
Minor 5ss
41.7
-0.9
3.2
55.9
48.3
Minor BPS
46.6
-0.1
1.7
63.31
41.2

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032105
34836522 - 34857775
21254