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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34839606_34841197_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34839606 - 34841197
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTAAT
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATAGTTTGATCT
Flanking Amino Acid:
FQVLEHQIKFKYSELTEVQQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
81.9
30.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.5
0.73
0.9
80.2
37.3
Minor 5ss
35.5
-1.6
2.7
44.7
36.6
Minor BPS
46.6
-0.1
1.7
63.31
41.2

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024288
34836599 - 34860642
24044
ENSAPLT00000020507
34836522 - 34857775
21254
ENSAPLT00000047804
34836599 - 34860642
24044
ENSAPLT00000008445
34836522 - 34860846
24325
ENSAPLT00000041582
34837060 - 34857775
20716
ENSAPLT00000025569
34836522 - 34857356
20835